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| First Round Draft Pick History |
| 1 | 17 | 17 | 2004 | Rookie Draft | OF | Alex | Rios | MIN |
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| 1 | 24 | 24 | 2004 | Rookie Draft | 1B | Prince | Fielder | MIN |
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| 1 | 13 | 13 | 2003 | Inaugural Draft | SP | Randy | Johnson | MLB |
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| Complete Draft History |
| 1 | 17 | 17 | 2004 | Rookie Draft | OF | Alex | Rios | MIN |
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| 1 | 24 | 24 | 2004 | Rookie Draft | 1B | Prince | Fielder | MIN |
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| 3 | 5 | 53 | 2004 | Rookie Draft | 2B | Antonio | Perez | MLB |
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| 3 | 17 | 65 | 2004 | Rookie Draft | RP | Derrick | Turnbow | MLB |
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| 4 | 17 | 89 | 2004 | Rookie Draft | RP | Todd | Wellemeyer | MLB |
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| 5 | 17 | 113 | 2004 | Rookie Draft | RP | Neil | Cotts | MLB |
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| 6 | 17 | 137 | 2004 | Rookie Draft | C | Humberto | Cota | MLB |
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| 7 | 17 | 161 | 2004 | Rookie Draft | OF | Bubba | Crosby | MLB |
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| 8 | 17 | 185 | 2004 | Rookie Draft | RP | Ryan | Bukvich | MLB |
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| 1 | 13 | 13 | 2003 | Inaugural Draft | SP | Randy | Johnson | MLB |
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| 2 | 12 | 36 | 2003 | Inaugural Draft | RP | Kerry | Wood | MLB |
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| 3 | 13 | 61 | 2003 | Inaugural Draft | 2B | Jeff | Kent | MLB |
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| 4 | 12 | 84 | 2003 | Inaugural Draft | C | Mike | Piazza | MLB |
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| 5 | 13 | 109 | 2003 | Inaugural Draft | 1B | Derrek | Lee | MLB |
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| 6 | 12 | 132 | 2003 | Inaugural Draft | 3B | Aaron | Boone | MLB |
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| 7 | 13 | 157 | 2003 | Inaugural Draft | OF | Preston | Wilson | MLB |
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| 8 | 19 | 187 | 2003 | Inaugural Draft | SP | Woody | Williams | MLB |
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| 9 | 6 | 198 | 2003 | Inaugural Draft | OF | Juan | Encarnacion | MLB |
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| 10 | 12 | 228 | 2003 | Inaugural Draft | 1B | Fred | McGriff | MLB |
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| 12 | 12 | 276 | 2003 | Inaugural Draft | 1B | Randall | Simon | MLB |
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| 12 | 23 | 287 | 2003 | Inaugural Draft | OF | Carl | Everett | MLB |
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| 13 | 2 | 290 | 2003 | Inaugural Draft | OF | Dave | Roberts | MLB |
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| 14 | 23 | 335 | 2003 | Inaugural Draft | SP | Jeremy | Bonderman | MLB |
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| 16 | 12 | 372 | 2003 | Inaugural Draft | 3B | Robin | Ventura | MLB |
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| 16 | 21 | 381 | 2003 | Inaugural Draft | 3B | Melvin | Mora | MLB |
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| 17 | 4 | 388 | 2003 | Inaugural Draft | RP | Jayson | Durocher | MLB |
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| 18 | 12 | 420 | 2003 | Inaugural Draft | SP | Omar | Daal | MLB |
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| 18 | 18 | 426 | 2003 | Inaugural Draft | SP | Miguel | Batista | MLB |
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| 19 | 13 | 445 | 2003 | Inaugural Draft | RP | Mike | Timlin | MLB |
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| 20 | 23 | 479 | 2003 | Inaugural Draft | RP | Brandon | Villafuerte | MLB |
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| 21 | 7 | 487 | 2003 | Inaugural Draft | RP | Guillermo | Mota | MLB |
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| 21 | 13 | 493 | 2003 | Inaugural Draft | RP | Matt | Kinney | MLB |
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| 22 | 18 | 522 | 2003 | Inaugural Draft | RP | Joe | Nathan | MLB |
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| 23 | 13 | 541 | 2003 | Inaugural Draft | RP | Franklyn | German | MLB |
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| 24 | 12 | 564 | 2003 | Inaugural Draft | RP | Antonio | Alfonseca | MLB |
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| 25 | 13 | 589 | 2003 | Inaugural Draft | SP | Jason | Davis | MLB |
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| 26 | 12 | 612 | 2003 | Inaugural Draft | RP | Jamie | Walker | MLB |
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| 27 | 13 | 637 | 2003 | Inaugural Draft | OF | Scott | Podsednik | MLB |
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| 28 | 12 | 660 | 2003 | Inaugural Draft | RP | Salomon | Torres | MLB |
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| 29 | 13 | 685 | 2003 | Inaugural Draft | OF | Michael | Restovich | MLB |
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| 31 | 13 | 733 | 2003 | Inaugural Draft | OF | Wily Mo | Pena | MLB |
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| 32 | 12 | 756 | 2003 | Inaugural Draft | SP | Ben | Howard | MLB |
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| 33 | 13 | 781 | 2003 | Inaugural Draft | RP | Bret | Prinz | MLB |
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| 34 | 12 | 804 | 2003 | Inaugural Draft | 3B | Jason | Smith | MLB |
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| 35 | 13 | 829 | 2003 | Inaugural Draft | SS | John | Valentin | MLB |
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| 36 | 12 | 852 | 2003 | Inaugural Draft | C | Chad | Kreuter | MLB |
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| 37 | 13 | 877 | 2003 | Inaugural Draft | SP | Jeremi | Gonzalez | MIN |
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| 38 | 12 | 900 | 2003 | Inaugural Draft | SP | Erik | Bedard | MLB |
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| 39 | 13 | 925 | 2003 | Inaugural Draft | RP | Micah | Bowie | MLB |
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