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| First Round Draft Pick History |
| 1 | 7 | 7 | 2005 | Rookie Draft | 2B | Jose | Castillo | MLB |
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| 1 | 18 | 18 | 2003 | Inaugural Draft | 1B | Albert | Pujols | MLB |
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| Complete Draft History |
| 1 | 7 | 7 | 2005 | Rookie Draft | 2B | Jose | Castillo | MLB |
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| 2 | 6 | 30 | 2005 | Rookie Draft | RP | Carlos | Almanzar | MLB |
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| 3 | 7 | 55 | 2005 | Rookie Draft | C | Jamie | Burke | MLB |
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| 4 | 18 | 90 | 2005 | Rookie Draft | RP | Jeff | Bennett | MLB |
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| 5 | 7 | 103 | 2005 | Rookie Draft | C | Juan | Brito | MLB |
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| 7 | 7 | 151 | 2005 | Rookie Draft | SP | Steve | Sparks | MLB |
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| 8 | 6 | 174 | 2005 | Rookie Draft | RP | Matt | Kinney | MLB |
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| 9 | 7 | 199 | 2005 | Rookie Draft | SP | Brandon | McCarthy | MIN |
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| 10 | 6 | 222 | 2005 | Rookie Draft | 1B | Daric | Barton | MIN |
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| 2 | 22 | 46 | 2004 | Rookie Draft | RP | Aquilino | Lopez | MLB |
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| 3 | 1 | 49 | 2004 | Rookie Draft | SP | Joe | Blanton | MIN |
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| 3 | 22 | 70 | 2004 | Rookie Draft | 2B | Bo | Hart | MLB |
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| 4 | 22 | 94 | 2004 | Rookie Draft | RP | Javier | Lopez | MLB |
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| 5 | 2 | 98 | 2004 | Rookie Draft | SP | Darren | Dreifort | MLB |
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| 5 | 22 | 118 | 2004 | Rookie Draft | OF | Alex | Escobar | MLB |
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| 6 | 22 | 142 | 2004 | Rookie Draft | SP | Jeremy | Griffiths | MLB |
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| 7 | 22 | 166 | 2004 | Rookie Draft | RP | Brian | Reith | MLB |
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| 8 | 22 | 190 | 2004 | Rookie Draft | 1B | Kevin | Witt | MLB |
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| 9 | 22 | 214 | 2004 | Rookie Draft | SS | Eric | Bruntlett | MLB |
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| 10 | 22 | 238 | 2004 | Rookie Draft | RP | Chris | Bootcheck | MLB |
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| 1 | 18 | 18 | 2003 | Inaugural Draft | 1B | Albert | Pujols | MLB |
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| 2 | 7 | 31 | 2003 | Inaugural Draft | SP | Mark | Mulder | MLB |
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| 3 | 18 | 66 | 2003 | Inaugural Draft | OF | Larry | Walker | MLB |
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| 4 | 7 | 79 | 2003 | Inaugural Draft | 1B | Rafael | Palmeiro | MLB |
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| 5 | 18 | 114 | 2003 | Inaugural Draft | SS | Jose | Hernandez | MLB |
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| 6 | 7 | 127 | 2003 | Inaugural Draft | SP | David | Wells | MLB |
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| 7 | 18 | 162 | 2003 | Inaugural Draft | 1B | Erubiel | Durazo | MLB |
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| 8 | 7 | 175 | 2003 | Inaugural Draft | OF | Luis | Gonzalez | MLB |
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| 9 | 18 | 210 | 2003 | Inaugural Draft | OF | Steve | Finley | MLB |
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| 10 | 7 | 223 | 2003 | Inaugural Draft | C | Benito | Santiago | MLB |
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| 11 | 18 | 258 | 2003 | Inaugural Draft | OF | Jerry | Hairston | MLB |
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| 12 | 7 | 271 | 2003 | Inaugural Draft | RP | LaTroy | Hawkins | MLB |
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| 13 | 18 | 306 | 2003 | Inaugural Draft | RP | Joe | Borowski | MLB |
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| 14 | 7 | 319 | 2003 | Inaugural Draft | RP | Buddy | Groom | MLB |
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| 15 | 18 | 354 | 2003 | Inaugural Draft | RP | Ben | Weber | MLB |
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| 16 | 7 | 367 | 2003 | Inaugural Draft | SP | John | Burkett | MLB |
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| 17 | 18 | 402 | 2003 | Inaugural Draft | OF | Mark | McLemore | MLB |
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| 18 | 7 | 415 | 2003 | Inaugural Draft | SP | Chuck | Finley | MLB |
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| 19 | 18 | 450 | 2003 | Inaugural Draft | RP | Jose | Jimenez | MLB |
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| 20 | 7 | 463 | 2003 | Inaugural Draft | 2B | Denny | Hocking | MLB |
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| 21 | 18 | 498 | 2003 | Inaugural Draft | SP | Tanyon | Sturze | MLB |
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| 22 | 7 | 511 | 2003 | Inaugural Draft | 2B | Bobby | Hill | MLB |
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| 23 | 18 | 546 | 2003 | Inaugural Draft | C | Todd | Pratt | MLB |
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| 24 | 7 | 559 | 2003 | Inaugural Draft | SP | Masato | Yoshii | MLB |
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| 25 | 18 | 594 | 2003 | Inaugural Draft | RP | Aaron | Heilman | MIN |
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| 26 | 7 | 607 | 2003 | Inaugural Draft | RP | Scott | Mullen | MLB |
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| 27 | 18 | 642 | 2003 | Inaugural Draft | SP | Scott | Kazmir | MIN |
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| 28 | 7 | 655 | 2003 | Inaugural Draft | C | Johnny | Estrada | MLB |
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| 29 | 18 | 690 | 2003 | Inaugural Draft | OF | Jeff | DaVanon | MLB |
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| 30 | 7 | 703 | 2003 | Inaugural Draft | 2B | Esteban | German | MLB |
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| 31 | 18 | 738 | 2003 | Inaugural Draft | RP | Justin | Speier | MLB |
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| 32 | 7 | 751 | 2003 | Inaugural Draft | SP | Brian | Tollberg | MLB |
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| 33 | 18 | 786 | 2003 | Inaugural Draft | SP | Sean | Douglass | MLB |
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| 34 | 7 | 799 | 2003 | Inaugural Draft | RP | Bob | Wickman | MLB |
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| 35 | 18 | 834 | 2003 | Inaugural Draft | RP | Manny | Aybar | MLB |
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| 36 | 7 | 847 | 2003 | Inaugural Draft | OF | Ben | Petrick | MLB |
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| 37 | 18 | 882 | 2003 | Inaugural Draft | 1B | Chris | Richard | MLB |
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| 38 | 7 | 895 | 2003 | Inaugural Draft | SP | Mickey | Callaway | MLB |
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| 39 | 18 | 930 | 2003 | Inaugural Draft | OF | Eric | Valent | MLB |
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| 40 | 7 | 943 | 2003 | Inaugural Draft | 2B | Augie | Ojeda | MLB |
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